Algorithm to Search for Genomic Rearrangements

Katarzyna Nałęcz-Charkiewicz , Robert Marek Nowak

Abstract

The aim of this article is to discuss the issue of comparing nucleotide sequences in order to detect chromosomal rearrangements (for example, in the study of genomes of two cucumber varieties, Polish and Chinese). Two basic algorithms for detecting rearrangements has been described: Smith-Waterman algorithm, as well as a new method of searching genetic markers in combination with Knuth-Morris-Pratt algorithm. The computer program in client-server architecture was developed. The algorithms properties were examined on genomes Escherichia coli and Arabidopsis thaliana genomes, and are prepared to compare two cucumber varieties, Polish and Chinese. The results are promising and further works are planned. © (2013) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
Author Katarzyna Nałęcz-Charkiewicz (FEIT)
Katarzyna Nałęcz-Charkiewicz,,
- Faculty of Electronics and Information Technology
, Robert Marek Nowak (FEIT / PE)
Robert Marek Nowak,,
- The Institute of Electronic Systems
Pages890319-1-890319-6
Book Romaniuk Ryszard (eds.): Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2013, vol. 8903, 2013, SPIE P.O. Box 10, Bellingham, Washington 98227-0010 USA , SPIE, ISBN 9780819497857, [ISSN 0277-786X ], 410 p., DOI:10.1117/12.2049644
DOIDOI:10.1117/12.2032639
URL http://dx.doi.org/10.1117/12.2074123
Languageen angielski
File
92901H.pdf 327.66 KB
Score (nominal)15
Score sourceconferenceIndex
ScoreMinisterial score = 10.0, 29-08-2020, BookChapterMatConfByIndicator
Ministerial score (2013-2016) = 15.0, 29-08-2020, BookChapterMatConfByIndicator
Publication indicators WoS Citations = 2; Scopus Citations = 2; GS Citations = 2.0
Citation count*2 (2015-05-12)
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* presented citation count is obtained through Internet information analysis and it is close to the number calculated by the Publish or Perish system.
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