New Tool to Combine Contigs by Usage of Paired-End Tags
- Przemysław Piotrowski ,
- Robert Marek Nowak
This article describes new algorithm to combine shorter sequences representing fragments of DNA molecules, called contigs, into longer structure called scaffold. This algorithm is based on the constraint satisfaction approach. The computer program ‘PETconn’ which is using presented algorithm based on three-tier architecture was developed. User interface is accessible by browser. The algorithm properties explored on generated data are promising. Performed experiments proved the correctness of the algorithm, but its performance is insufficient for real data. © (2013) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
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- Romaniuk Ryszard Ryszard Romaniuk (eds.): Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2013, vol. 8903, 2013, SPIE P.O. Box 10, Bellingham, Washington 98227-0010 USA , SPIE, 410 p., ISBN 9780819497857. DOI:10.1117/12.2049644 Opening in a new tab
- DOI:10.1117/12.2032638 Opening in a new tab
- (en) English
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