New Tool to Combine Contigs by Usage of Paired-End Tags

Przemysław Piotrowski , Robert Marek Nowak

Abstract

This article describes new algorithm to combine shorter sequences representing fragments of DNA molecules, called contigs, into longer structure called scaffold. This algorithm is based on the constraint satisfaction approach. The computer program ‘PETconn’ which is using presented algorithm based on three-tier architecture was developed. User interface is accessible by browser. The algorithm properties explored on generated data are promising. Performed experiments proved the correctness of the algorithm, but its performance is insufficient for real data. © (2013) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
Author Przemysław Piotrowski
Przemysław Piotrowski ,,
-
, Robert Marek Nowak (FEIT / PE)
Robert Marek Nowak,,
- The Institute of Electronic Systems
Pages890318-1-890318-6
Book Romaniuk Ryszard (eds.): Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2013, vol. 8903, 2013, SPIE P.O. Box 10, Bellingham, Washington 98227-0010 USA , SPIE, ISBN 9780819497857, [ISSN 0277-786X ], 410 p., DOI:10.1117/12.2049644
DOIDOI:10.1117/12.2032638
Languageen angielski
Score (nominal)15
Score sourceconferenceIndex
ScoreMinisterial score = 10.0, 29-08-2020, BookChapterMatConfByIndicator
Ministerial score (2013-2016) = 15.0, 29-08-2020, BookChapterMatConfByIndicator
Publication indicators WoS Citations = 1; Scopus Citations = 1; GS Citations = 1.0
Citation count*1 (2015-05-20)
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* presented citation count is obtained through Internet information analysis and it is close to the number calculated by the Publish or Perish system.
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