The DNA Assembler for Next Generation Sequencers
Jan Twardowski , Robert Marek Nowak
AbstractThe aim of this paper is new application for de novo assembly DNA reads produced by next generation sequencers. The algorithm based on de Bruin graph is proposed, it uses both DNA strands: coding and complementary. The read errors are corrected. The repetitive sequences longer than read are correctly reconstructed in some cases. The application in client-server architecture was developed and tested on pseudo-random sequences and reads generated from genomes of model organisms. © (2013) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
|Book||Romaniuk Ryszard (eds.): Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2013, vol. 8903, 2013, SPIE P.O. Box 10, Bellingham, Washington 98227-0010 USA , SPIE, ISBN 9780819497857, [ISSN 0277-786X ], 410 p., DOI:10.1117/12.2049644|
|Score|| = 10.0, 29-08-2020, BookChapterMatConfByIndicator|
= 15.0, 29-08-2020, BookChapterMatConfByIndicator
|Publication indicators||= 1; = 1|
* presented citation count is obtained through Internet information analysis and it is close to the number calculated by the Publish or Perish system.