Molecular diagnostic experience of whole-exome sequencing in adult patients

Jennifer E. Posey , Jill A. Rosenfeld , Regis A. James , Matthew Bainbridge , Zhiyv Niu , Xia Wang , Shweta Dhar , Wojciech Wiszniewski , Zeynep H. C. Akdemir , Tomasz Gambin , Fan Xia , Richard E. Person , Magdalena Walkiewicz , Chad A. Shaw , V. Reid Sutton , Arthur L. Beaudet , Donna Muzny , Christine M. Eng , Yaping Yang , Richard A. Gibbs , James R. Lupski , Eric Boerwinkle , Sharon E. Plon

Abstract

Purpose: Whole-exome sequencing (WES) is increasingly used as a diagnostic tool in medicine, but prior reports focus on predominantly pediatric cohorts with neurologic or developmental disorders. We describe the diagnostic yield and characteristics of WES in adults.

Methods: We performed a retrospective analysis of consecutive WES reports for adults from a diagnostic laboratory. Phenotype composition was determined using Human Phenotype Ontology terms.

Results: Molecular diagnoses were reported for 17.5% (85/486) of adults, which is lower than that for a primarily pediatric population (25.2%; P = 0.0003); the diagnostic rate was higher (23.9%) for those 18–30 years of age compared to patients older than 30 years (10.4%; P = 0.0001). Dual Mendelian diagnoses contributed to 7% of diagnoses, revealing blended phenotypes. Diagnoses were more frequent among individuals with abnormalities of the nervous system, skeletal system, head/neck, and growth. Diagnostic rate was independent of family history information, and de novo mutations contributed to 61.4% of autosomal dominant diagnoses.

Conclusion: Early WES experience in adults demonstrates molecular diagnoses in a substantial proportion of patients, informing clinical management, recurrence risk, and recommendations for relatives. A positive family history was not predictive, consistent with molecular diagnoses often revealed by de novo events, informing the Mendelian basis of genetic disease in adults.

Author Jennifer E. Posey
Jennifer E. Posey,,
-
, Jill A. Rosenfeld
Jill A. Rosenfeld,,
-
, Regis A. James
Regis A. James,,
-
, Matthew Bainbridge
Matthew Bainbridge,,
-
, Zhiyv Niu
Zhiyv Niu,,
-
, Xia Wang
Xia Wang,,
-
, Shweta Dhar
Shweta Dhar,,
-
, Wojciech Wiszniewski
Wojciech Wiszniewski ,,
-
, Zeynep H. C. Akdemir
Zeynep H. C. Akdemir,,
-
, Tomasz Gambin II - [Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA]
Tomasz Gambin,,
- The Institute of Computer Science
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA
et al.
Journal seriesGenetics in Medicine, ISSN 1098-3600
Issue year2016
Vol18
Pages678-685
Publication size in sheets0.5
Keywords in Englishadult patients; whole-exome sequencing
DOIDOI:10.1038/gim.2015.142
URL http://www.nature.com/gim/journal/v18/n7/full/gim2015142a.html
Languageen angielski
Score (nominal)40
ScoreMinisterial score = 40.0, 27-03-2017, ArticleFromJournal
Ministerial score (2013-2016) = 40.0, 27-03-2017, ArticleFromJournal
Publication indicators WoS Impact Factor: 2016 = 8.229 (2) - 2016=7.437 (5)
Citation count*36 (2018-02-16)
Cite
Share Share



* presented citation count is obtained through Internet information analysis and it is close to the number calculated by the Publish or Perish system.
Back